Alicea, B. (2016). Evolution in Eggs and Phases: experimental evolution of fecundity and reproductive timing in Caenorhabditis elegans. Royal Society Open Science, 3, 160496. doi:10.1098/rsos.160496 Paper Supplemental data 1 2
Alicea, B., Portegys, T.E., and Gordon, R. (2016). Information Isometry Technique Reveals Organizational Features in Developmental Cell Lineages. bioRxiv, doi:10.1101/062539 Paper Supplemental data 1 2 3
Alicea, B. and Gordon, R. (2016). Quantifying Mosaic Development: Towards an Evo-Devo Postmodern Synthesis of the Evolution of Development Via Differentiation Trees of Embryos [invited]. Biology, 5(3), 33. SI: Beyond the Modern Evolutionary Synthesis - what have we missed? Paper Supplemental Data
Alicea, B. (2016). Genotype-specific developmental plasticity shapes the timing and robustness of reproductive capacity in Caenorhabditis elegans. bioRxiv, doi:10.1101/045609 Paper Supplemental data 1 2 3 4 5 6
Alicea, B., McGrew, S., Gordon, R., Larson, S., Warrington, T., and Watts, M. (2014). DevoWorm: differentiation waves and computation in C. elegans embryogenesis. bioRxiv, doi:10.1101/009993 Paper Dataset and code (Github)
Stone, R., Portegys, T., Mikhailovsky, G., and Alicea, B. Origins of the Embryo: self-organization through cybernetic regulation. In "Habitability of the Universe Before Earth". R. Gordon and A. Sharov, eds. Elsevier, Amsterdam (2017).
Portegys, T., Pascualy, G., Gordon, R., McGrew, S., and Alicea, B. (2016). Morphozoic: cellular automata with nested neighborhoods as a metamorphic representation of morphogenesis. In “Multi-Agent Based Simulations Applied to Biological and Environmental Systems“. Abstract Paper Code (Github)
Alicea, B. and Gordon, R. Network Architecture of Embryo Developmental Regulation. 2015 Network Frontiers Workshop (Northwestern University) and 2016 Midwest Regenerative Medicine Conference (Wash U -- St. Louis). Poster Extended abstract Presentation
Alicea, B., Larson, S., McGrew, S., and Gordon, R. DevoWorm: raising the worm on datapoints, trees, and matrices. International C. elegans Conference. Los Angeles, CA. Poster (2015). Poster
The Emergent Worm in Heat Map Form. Figshare, doi:10.6084/m9.figshare.3791970.
Developmental connectome during embryogenesis (Caenorhabditis elegans). ResearchGate, doi: 10.13140/RG.2.2.20933. 65765 YouTube
Upcoming Update on DevoWorm Project to OpenWorm. Synthetic Daisies blog, April 6, 2016.
Posters at the International C. elegans Meeting. Synthetic Daisies blog, June 30, 2015.
Upcoming DevoWorm talk to the OpenWorm group. Synthetic Daisies blog, September 10, 2014.
Now Announcing the DevoWorm Project. Synthetic Daisies blog, June 3, 2014.
Quantifying New Variables for C. elegans Integrtive Biology. NCSA, University of Illinois Urbana-Champaign (February, 2015).
DynamicWorm. General Proposal (December 2014).